Agri-SNPs – MyNutRiceBase

Search for SNPs with known genes that associated with agronomically important traits:

Class:

Traits:

SNP effects:

RAPDB ID:

Gene descriptions:

Class	Traits	SNP ID	SNP effects	RAPDB ID	Gene descriptions	Gene symbols	Ref allele	Allele	Chr	Pos	Bali	PH9	MRM16	MRQ100	MR297	MRQ76
Agronomical	drawf	chr01_10312477	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,312,477	CC	CC	CA	CC	CC	CC
Abiotic Stress	lodging drawf	chr01_10312477	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,312,477	CC	CC	CA	CC	CC	CC
Biochemical	absisic acid	chr01_10312477	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,312,477	CC	CC	CA	CC	CC	CC
Biochemical	absisic acid	chr01_10312516	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	G	A	chr01	10,312,516	GA	GG	GG	GA	GA	GA
Agronomical	drawf	chr01_10312516	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	G	A	chr01	10,312,516	GA	GG	GG	GA	GA	GA
Abiotic Stress	lodging drawf	chr01_10312516	5_prime_UTR_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	G	A	chr01	10,312,516	GA	GG	GG	GA	GA	GA
Abiotic Stress	lodging drawf	chr01_10313534	intron_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,313,534	CA	CC	CA	CA	CA	CA
Biochemical	absisic acid	chr01_10313534	intron_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,313,534	CA	CC	CA	CA	CA	CA
Agronomical	drawf	chr01_10313534	intron_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	C	A	chr01	10,313,534	CA	CC	CA	CA	CA	CA
Abiotic Stress	lodging drawf	chr01_10313901	intron_variant	Os01g0286900	Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).	OsIAA4,IAA4	T	C	chr01	10,313,901	TC	TT	TC	TC	TC	TC
Class	Traits		SNP effects	RAPDB ID	Gene descriptions