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Search putative deleterious SNPs in genome sequences:
Traits:
Class:
RAPDB ID:
MSU ID:
R498 ID:
Gene descriptions:
SIFT score:
Allele:
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Traits
Class
RAPDB ID
MSU ID
R498 ID
Gene symbol
Gene category
Gene descriptions
SNP ID
SIFT score
SIFT prediction
Ref allele
Allele
Chr
Pos
Ref AA
Allele AA
AA pos
Bali
PH9
MRM16
MRQ100
MR297
MRQ76
RAPDB transcript ID
SIFT median
Num. of seqs
dbSNP
salicylic acid
Biochemical
Os01g0358400
LOC_Os01g25610
OsR498G0100935300.01
RPS4
NA
40S ribosomal protein S4, putative, expressed
chr01_14514480
0.04
DELETERIOUS
A
G
chr01
14,514,480
I
V
92
AG
AA
AA
AA
AA
AA
OS01T0358400-01
2.65
201
novel
drought tolerance
Abiotic Stress
Os01g0358400
LOC_Os01g25610
OsR498G0100935300.01
RPS4
NA
40S ribosomal protein S4, putative, expressed
chr01_14514480
0.04
DELETERIOUS
A
G
chr01
14,514,480
I
V
92
AG
AA
AA
AA
AA
AA
OS01T0358400-01
2.65
201
novel
BLB
Biotic stress
Os01g0383900
LOC_Os01g28690
OsR498G0101004300.01
APIP12
NA
nucleoporin autopeptidase domain containing protein, expressed
chr01_16062855
0.04
DELETERIOUS
A
G
chr01
16,062,855
S
G
3
AG
AA
AG
AG
AG
AG
OS01T0383900-01
3.15
5
rs18634483
shoot
Morphology
Os01g0142800
LOC_Os01g04950
OsR498G0100152900.01
OsPTR7,PTR7
NA
peptide transporter PTR2, putative, expressed
chr01_2296920
0.00
DELETERIOUS
C
T
chr01
2,296,920
R
W
223
CT
CT
CT
CT
CT
CC
OS01T0142800-02
3.43
9
novel
grain
Agronomical
Os01g0142800
LOC_Os01g04950
OsR498G0100152900.01
OsPTR7,PTR7
NA
peptide transporter PTR2, putative, expressed
chr01_2296920
0.00
DELETERIOUS
C
T
chr01
2,296,920
R
W
223
CT
CT
CT
CT
CT
CC
OS01T0142800-02
3.43
9
novel
transporter
Biochemical
Os01g0142800
LOC_Os01g04950
OsR498G0100152900.01
OsPTR7,PTR7
NA
peptide transporter PTR2, putative, expressed
chr01_2296920
0.00
DELETERIOUS
C
T
chr01
2,296,920
R
W
223
CT
CT
CT
CT
CT
CC
OS01T0142800-02
3.43
9
novel
endosperm
Morphology
Os01g0601000
LOC_Os01g41720
OsR498G0101477000.01
OsEnS-10
NA
expressed protein
chr01_23611397
0.01
DELETERIOUS
A
G
chr01
23,611,397
S
P
461
AA
AG
AA
AA
AA
AA
OS01T0601000-00
3.41
20
novel
endosperm
Morphology
Os01g0601000
LOC_Os01g41720
OsR498G0101477000.01
OsEnS-10
NA
expressed protein
chr01_23611652
0.01
DELETERIOUS
T
G
chr01
23,611,652
Q
P
433
TG
TT
TG
TT
TT
TG
OS01T0601000-00
3.41
19
novel
culm
Morphology
Os01g0612700
LOC_Os01g42710
OsR498G0101532700.01
OsLOL5,OsLSD5,LOL5,LOL2,OsLOL2
LOL5
retrotransposon protein, putative, unclassified, expressed
chr01_24294974
0.01
DELETERIOUS
C
T
chr01
24,294,974
P
L
228
CT
CC
CT
CT
CT
CT
OS01T0612700-01
2.70
10
novel
lodging drawf
Abiotic Stress
Os01g0612700
LOC_Os01g42710
OsR498G0101532700.01
OsLOL5,OsLSD5,LOL5,LOL2,OsLOL2
LOL5
retrotransposon protein, putative, unclassified, expressed
chr01_24294974
0.01
DELETERIOUS
C
T
chr01
24,294,974
P
L
228
CT
CC
CT
CT
CT
CT
OS01T0612700-01
2.70
10
novel
Traits
Class
RAPDB ID
MSU ID
R498 ID
Gene descriptions
SIFT score
Allele
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