Search for putative flavonoid and folate SNPs based on SNPs ID, chromosome, alleles and pathways
SNP ID | RAPDB ID | Gene descriptions | SNP effects | Pathways | Ref allele | Allele | Chr | Pos | Bali | PH9 | MRM16 | MRQ100 | MR297 | MRQ76 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr01_23457564 | Os01g0597800 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | C | A | chr01 | 23,457,564 | CC | CA | CC | CC | CC | CC |
chr01_23457751 | Os01g0597800 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | 3_prime_UTR_variant | flavonoid | C | G | chr01 | 23,457,751 | CC | CG | CC | CC | CC | CC |
chr01_23457918 | Os01g0597800 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | 3_prime_UTR_variant | flavonoid | C | T | chr01 | 23,457,918 | CC | CT | CC | CC | CC | CC |
chr01_23464804 | Os01g0598000 | Similar to UDP-glycosyltransferase UGT703A5. | synonymous_variant | flavonoid | C | T | chr01 | 23,464,804 | CC | CT | CC | CC | CC | CC |
chr01_23465058 | Os01g0598000 | Similar to UDP-glycosyltransferase UGT703A5. | missense_variant | flavonoid | A | T | chr01 | 23,465,058 | AA | AT | AA | AA | AA | AA |
chr01_25383073 | Os01g0633500 | Similar to Dihydroflavonol reductase. | 5_prime_UTR_variant | flavonoid | G | A | chr01 | 25,383,073 | GG | GG | GG | GG | GG | GA |
chr01_25383639 | Os01g0633500 | Similar to Dihydroflavonol reductase. | intron_variant | flavonoid | C | G | chr01 | 25,383,639 | CG | CC | CC | CC | CC | CC |
chr01_25384314 | Os01g0633500 | Similar to Dihydroflavonol reductase. | missense_variant | flavonoid | C | A | chr01 | 25,384,314 | CC | CC | CC | CC | CC | CA |
chr01_25384379 | Os01g0633500 | Similar to Dihydroflavonol reductase. | synonymous_variant | flavonoid | C | T | chr01 | 25,384,379 | CT | CC | CC | CC | CC | CC |
chr01_30667696 | Os01g0735300 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | G | A | chr01 | 30,667,696 | GG | GG | GG | GG | GG | GA |
chr01_35637429 | Os01g0832600 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | C | T | chr01 | 35,637,429 | CT | CC | CC | CC | CC | CC |
chr01_35637432 | Os01g0832600 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | G | T | chr01 | 35,637,432 | GG | GG | GG | GG | GG | GT |
chr01_35637783 | Os01g0832600 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | C | A | chr01 | 35,637,783 | CC | CC | CC | CC | CC | CA |
chr01_3918714 | Os01g0176050 | Hypothetical protein. | intron_variant | flavonoid | G | A | chr01 | 3,918,714 | GG | GG | GG | GG | GG | GA |
chr01_3918714 | Os01g0176000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | intron_variant | flavonoid | G | A | chr01 | 3,918,714 | GG | GG | GG | GG | GG | GA |
chr01_3918989 | Os01g0176000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | intron_variant | flavonoid | T | C | chr01 | 3,918,989 | TT | TT | TC | TT | TT | TT |
chr01_3918989 | Os01g0176050 | Hypothetical protein. | intron_variant | flavonoid | T | C | chr01 | 3,918,989 | TT | TT | TC | TT | TT | TT |
chr01_3919804 | Os01g0176050 | Hypothetical protein. | 5_prime_UTR_variant | flavonoid | A | G | chr01 | 3,919,804 | AA | AA | AA | AA | AA | AG |
chr01_3919804 | Os01g0176000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | A | G | chr01 | 3,919,804 | AA | AA | AA | AA | AA | AG |
chr01_3920003 | Os01g0176000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | missense_variant | flavonoid | T | C | chr01 | 3,920,003 | TT | TT | TC | TT | TT | TT |
chr01_3920003 | Os01g0176050 | Hypothetical protein. | 5_prime_UTR_variant | flavonoid | T | C | chr01 | 3,920,003 | TT | TT | TC | TT | TT | TT |
chr01_3920111 | Os01g0176050 | Hypothetical protein. | 5_prime_UTR_variant | flavonoid | A | G | chr01 | 3,920,111 | AA | AA | AA | AA | AA | AG |
chr01_3920111 | Os01g0176000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | missense_variant | flavonoid | A | G | chr01 | 3,920,111 | AA | AA | AA | AA | AA | AG |
chr01_39253383 | Os01g0901500 | Similar to 4-coumarate--CoA ligase-like 5. | synonymous_variant | flavonoid | G | A | chr01 | 39,253,383 | GG | GG | GG | GA | GG | GG |
chr01_39256032 | Os01g0901550 | Hypothetical gene. | intron_variant | flavonoid | G | C | chr01 | 39,256,032 | GC | GG | GG | GG | GG | GG |
chr01_39256032 | Os01g0901500 | Similar to 4-coumarate--CoA ligase-like 5. | intron_variant | flavonoid | G | C | chr01 | 39,256,032 | GC | GG | GG | GG | GG | GG |
chr01_39258240 | Os01g0901600 | Similar to 4-coumarate--CoA ligase-like 6. | synonymous_variant | flavonoid | C | T | chr01 | 39,258,240 | CT | CC | CC | CC | CC | CC |
chr01_39258803 | Os01g0901600 | Similar to 4-coumarate--CoA ligase-like 6. | missense_variant | flavonoid | C | T | chr01 | 39,258,803 | CT | CC | CC | CC | CC | CC |
chr01_39260539 | Os01g0901650 | Hypothetical gene. | intron_variant | flavonoid | C | A | chr01 | 39,260,539 | CA | CC | CC | CC | CC | CC |
chr01_39260539 | Os01g0901600 | Similar to 4-coumarate--CoA ligase-like 6. | intron_variant | flavonoid | C | A | chr01 | 39,260,539 | CA | CC | CC | CC | CC | CC |
chr01_7667525 | Os01g0238500 | Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor. | intron_variant | folate | T | G | chr01 | 7,667,525 | TG | TG | TG | TG | TG | TG |
chr01_7667976 | Os01g0238500 | Similar to Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor. | 3_prime_UTR_variant | folate | T | C | chr01 | 7,667,976 | TC | TC | TC | TC | TC | TC |
chr02_12767696 | Os02g0320300 | Similar to Chalcone isomerase 3. | intron_variant | flavonoid | C | G | chr02 | 12,767,696 | CC | CG | CC | CC | CC | CC |
chr02_16678419 | Os02g0483500 | Transferase family protein. | 3_prime_UTR_variant | flavonoid | A | T | chr02 | 16,678,419 | AA | AA | AA | AA | AA | AT |
chr02_16678835 | Os02g0483500 | Transferase family protein. | missense_variant | flavonoid | A | C | chr02 | 16,678,835 | AA | AA | AA | AA | AA | AC |
chr02_24988914 | Os02g0626400 | Similar to Phenylalanine ammonia-lyase.;Phenylalanine ammonia-lyase (EC 4.3.1.5). | synonymous_variant | flavonoid | G | A | chr02 | 24,988,914 | GG | GG | GG | GG | GG | GA |
chr02_25008770 | Os02g0627100 | Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5). | synonymous_variant | flavonoid | C | T | chr02 | 25,008,770 | CC | CC | CC | CC | CC | CT |
chr02_27907649 | Os02g0682500 | Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein). | intron_variant | flavonoid | T | C | chr02 | 27,907,649 | TT | TT | TC | TT | TT | TT |
chr02_28678322 | Os02g0697400 | 4-coumarate:coenzyme A ligase, Flavonoid biosynthesis | intron_variant | flavonoid | G | A | chr02 | 28,678,322 | GG | GG | GA | GG | GG | GG |
chr02_32311178 | Os02g0767300 | Similar to Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS) (CitFLS). | intron_variant | flavonoid | C | A | chr02 | 32,311,178 | CC | CC | CC | CC | CA | CC |
chr02_32958017 | Os02g0778500 | Chalcone isomerase domain containing protein. | intron_variant | flavonoid | G | A | chr02 | 32,958,017 | GA | GG | GG | GG | GG | GG |
chr02_32958590 | Os02g0778500 | Chalcone isomerase domain containing protein. | missense_variant | flavonoid | G | A | chr02 | 32,958,590 | GA | GG | GG | GG | GG | GG |
chr02_9950921 | Os02g0273100 | Aminotransferase, class IV family protein. | 3_prime_UTR_variant | folate | C | T | chr02 | 9,950,921 | CC | CT | CC | CC | CC | CT |
chr02_9951113 | Os02g0273100 | Aminotransferase, class IV family protein. | 3_prime_UTR_variant | folate | G | A | chr02 | 9,951,113 | GG | GG | GG | GG | GG | GA |
chr02_9951704 | Os02g0273100 | Aminotransferase, class IV family protein. | missense_variant | folate | C | T | chr02 | 9,951,704 | CT | CT | CC | CT | CT | CT |
chr02_9952002 | Os02g0273100 | Aminotransferase, class IV family protein. | missense_variant | folate | T | A | chr02 | 9,952,002 | TT | TT | TT | TA | TA | TT |
chr02_9952339 | Os02g0273100 | Aminotransferase, class IV family protein. | synonymous_variant | folate | T | A | chr02 | 9,952,339 | TT | TT | TT | TA | TA | TT |
chr02_9952583 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | C | A | chr02 | 9,952,583 | CC | CA | CC | CC | CC | CA |
chr02_9952945 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | G | A | chr02 | 9,952,945 | GG | GG | GG | GA | GA | GG |
chr02_9953220 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | T | C | chr02 | 9,953,220 | TT | TT | TC | TC | TC | TT |
chr02_9953370 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | A | T | chr02 | 9,953,370 | AA | AT | AA | AA | AA | AT |
chr02_9953807 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | G | C | chr02 | 9,953,807 | GG | GC | GG | GG | GG | GC |
chr02_9954371 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | C | T | chr02 | 9,954,371 | CC | CT | CC | CC | CC | CT |
chr02_9954675 | Os02g0273100 | Aminotransferase, class IV family protein. | intron_variant | folate | A | G | chr02 | 9,954,675 | AA | AA | AA | AG | AG | AA |
chr03_10042510 | Os03g0289800 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | T | A | chr03 | 10,042,510 | TT | TT | TT | TA | TT | TT |
chr03_10042774 | Os03g0289800 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | C | G | chr03 | 10,042,774 | CC | CC | CC | CG | CC | CC |
chr03_34394898 | Os03g0819600 | Chalcone isomerase (EC 5.5.1.6). | intron_variant | flavonoid | T | C | chr03 | 34,394,898 | TC | TT | TT | TT | TT | TT |
chr03_34395506 | Os03g0819600 | Chalcone isomerase (EC 5.5.1.6). | missense_variant | flavonoid | C | T | chr03 | 34,395,506 | CT | CC | CC | CC | CC | CC |
chr03_4442342 | Os03g0184550 | Similar to Dihydroflavonol-4-reductase. | intron_variant | flavonoid | C | T | chr03 | 4,442,342 | CC | CC | CC | CC | CC | CT |
chr03_4442580 | Os03g0184550 | Similar to Dihydroflavonol-4-reductase. | synonymous_variant | flavonoid | C | A | chr03 | 4,442,580 | CC | CC | CC | CC | CC | CA |
chr03_4443004 | Os03g0184550 | Similar to Dihydroflavonol-4-reductase. | intron_variant | flavonoid | T | A | chr03 | 4,443,004 | TT | TT | TT | TT | TT | TA |
chr03_4443539 | Os03g0184550 | Similar to Dihydroflavonol-4-reductase. | intron_variant | flavonoid | G | T | chr03 | 4,443,539 | GG | GG | GG | GG | GG | GT |
chr03_4445205 | Os03g0184600 | Similar to Dihydroflavonol-4-reductase. | intron_variant | flavonoid | A | G | chr03 | 4,445,205 | AA | AA | AA | AA | AA | AG |
chr03_4445504 | Os03g0184600 | Similar to Dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | G | A | chr03 | 4,445,504 | GG | GG | GG | GG | GG | GA |
chr03_4446256 | Os03g0184600 | Similar to Dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | A | G | chr03 | 4,446,256 | AA | AA | AA | AA | AA | AG |
chr03_641054 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | A | G | chr03 | 641,054 | AG | AG | AG | AG | AG | AG |
chr03_641444 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | A | G | chr03 | 641,444 | AG | AG | AG | AG | AG | AG |
chr03_641671 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | missense_variant | folate | C | G | chr03 | 641,671 | CG | CG | CG | CG | CG | CG |
chr03_642147 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | synonymous_variant | folate | T | C | chr03 | 642,147 | TC | TC | TC | TC | TC | TC |
chr03_643681 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | A | G | chr03 | 643,681 | AG | AG | AG | AG | AG | AG |
chr03_644143 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | C | chr03 | 644,143 | TC | TC | TC | TC | TC | TC |
chr03_644561 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | G | chr03 | 644,561 | TG | TG | TG | TG | TG | TG |
chr03_644732 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | C | chr03 | 644,732 | TC | TC | TC | TC | TC | TC |
chr03_645267 | Os03g0111100 | Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | A | G | chr03 | 645,267 | AG | AG | AG | AG | AG | AG |
chr04_261584 | Os04g0103900 | Similar to Chalcone synthase. | intron_variant | flavonoid | C | T | chr04 | 261,584 | CC | CT | CC | CC | CC | CC |
chr04_262753 | Os04g0103900 | Similar to Chalcone synthase. | synonymous_variant | flavonoid | T | C | chr04 | 262,753 | TT | TC | TT | TT | TT | TT |
chr04_27917649 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,917,649 | CC | CC | CC | CT | CC | CC |
chr04_27919173 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,919,173 | CC | CC | CT | CC | CC | CC |
chr04_27919836 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,919,836 | CC | CC | CT | CC | CC | CC |
chr04_27921263 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,921,263 | CT | CC | CC | CC | CC | CC |
chr04_27921779 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | G | chr04 | 27,921,779 | CC | CC | CC | CC | CC | CG |
chr04_27921842 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,921,842 | CC | CC | CT | CC | CC | CC |
chr04_27922041 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | A | chr04 | 27,922,041 | GG | GG | GA | GG | GG | GG |
chr04_27923168 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,923,168 | CT | CC | CC | CC | CC | CC |
chr04_27924251 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,924,251 | CT | CC | CC | CC | CC | CC |
chr04_27929429 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | A | chr04 | 27,929,429 | GG | GG | GA | GG | GG | GG |
chr04_27930982 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | A | chr04 | 27,930,982 | GG | GG | GG | GA | GG | GG |
chr04_27932975 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | T | chr04 | 27,932,975 | GG | GG | GG | GT | GG | GG |
chr04_27934034 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | A | chr04 | 27,934,034 | GG | GG | GA | GG | GG | GG |
chr04_27935883 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | G | T | chr04 | 27,935,883 | GG | GG | GT | GG | GG | GG |
chr04_27938398 | Os04g0557500 | Similar to Transcriptional activator Ra homolog (Fragment). | intron_variant | flavonoid | C | T | chr04 | 27,938,398 | CC | CC | CC | CC | CT | CC |
chr04_27950401 | Os04g0557800 | Similar to R-type basic helix-loop-helix protein. | intron_variant | flavonoid | C | T | chr04 | 27,950,401 | CC | CC | CC | CT | CC | CC |
chr04_27953839 | Os04g0557800 | Similar to R-type basic helix-loop-helix protein. | intron_variant | flavonoid | G | T | chr04 | 27,953,839 | GG | GG | GG | GG | GT | GT |
chr04_32087371 | Os04g0630800 | Similar to Anthocyanidin reductase. | intron_variant | flavonoid | A | G | chr04 | 32,087,371 | AA | AA | AG | AA | AA | AA |
chr04_32087780 | Os04g0630800 | Similar to Anthocyanidin reductase. | missense_variant | flavonoid | G | A | chr04 | 32,087,780 | GG | GG | GA | GG | GG | GG |
chr04_32087936 | Os04g0630800 | Similar to Anthocyanidin reductase. | intron_variant | flavonoid | C | G | chr04 | 32,087,936 | CC | CG | CC | CC | CC | CC |
chr04_33814230 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 3_prime_UTR_variant | folate | G | A | chr04 | 33,814,230 | GA | GA | GA | GA | GA | GA |
chr04_33814548 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 3_prime_UTR_variant | folate | G | A | chr04 | 33,814,548 | GA | GA | GA | GA | GA | GA |
chr04_33814904 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 3_prime_UTR_variant | folate | G | A | chr04 | 33,814,904 | GA | GA | GA | GA | GA | GA |
chr04_33814904 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | synonymous_variant | folate | G | A | chr04 | 33,814,904 | GA | GA | GA | GA | GA | GA |
chr04_33815486 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | synonymous_variant | folate | A | G | chr04 | 33,815,486 | AG | AG | AG | AG | AG | AG |
chr04_33815486 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 3_prime_UTR_variant | folate | A | G | chr04 | 33,815,486 | AG | AG | AG | AG | AG | AG |
chr04_33815678 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 3_prime_UTR_variant | folate | T | C | chr04 | 33,815,678 | TC | TC | TC | TC | TC | TC |
chr04_33815678 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | synonymous_variant | folate | T | C | chr04 | 33,815,678 | TC | TC | TC | TC | TC | TC |
chr04_33816380 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | intron_variant | folate | A | G | chr04 | 33,816,380 | AG | AG | AG | AG | AG | AG |
chr04_33817339 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | intron_variant | folate | A | G | chr04 | 33,817,339 | AG | AG | AG | AG | AG | AG |
chr04_33818710 | Os04g0662700 | Similar to GTP cyclohydrolase 1 isoform TaA. | 5_prime_UTR_variant | folate | T | A | chr04 | 33,818,710 | TA | TA | TA | TA | TA | TA |
chr04_7154268 | Os04g0206500 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | intron_variant | flavonoid | C | T | chr04 | 7,154,268 | CC | CC | CC | CT | CC | CC |
chr04_7154553 | Os04g0206500 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | intron_variant | flavonoid | G | A | chr04 | 7,154,553 | GG | GG | GG | GA | GG | GG |
chr04_7155179 | Os04g0206500 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | G | A | chr04 | 7,155,179 | GG | GG | GA | GG | GG | GG |
chr04_7155887 | Os04g0206500 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | G | T | chr04 | 7,155,887 | GG | GG | GG | GT | GG | GG |
chr05_14902924 | Os05g0320700 | Similar to Cytochrome P450. | intron_variant | flavonoid | T | A | chr05 | 14,902,924 | TT | TT | TT | TT | TT | TA |
chr05_14903362 | Os05g0320700 | Similar to Cytochrome P450. | intron_variant | flavonoid | A | G | chr05 | 14,903,362 | AA | AG | AA | AA | AA | AA |
chr05_14903366 | Os05g0320700 | Similar to Cytochrome P450. | intron_variant | flavonoid | C | T | chr05 | 14,903,366 | CC | CC | CC | CC | CT | CC |
chr05_1563129 | Os05g0127500 | Similar to Leucoanthocyanidin dioxygenase-like protein. | intron_variant | flavonoid | A | G | chr05 | 1,563,129 | AA | AA | AA | AA | AG | AA |
chr05_24607783 | Os05g0499800 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | 3_prime_UTR_variant | flavonoid | T | C | chr05 | 24,607,783 | TT | TT | TT | TC | TT | TT |
chr05_24611835 | Os05g0500101 | Hypothetical gene. | 3_prime_UTR_variant | flavonoid | C | T | chr05 | 24,611,835 | CC | CC | CT | CC | CC | CC |
chr05_24611835 | Os05g0500000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | C | T | chr05 | 24,611,835 | CC | CC | CT | CC | CC | CC |
chr05_25654123 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | C | T | chr05 | 25,654,123 | CT | CT | CT | CT | CT | CT |
chr05_25654892 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | C | G | chr05 | 25,654,892 | CG | CG | CG | CG | CG | CG |
chr05_25655093 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | T | C | chr05 | 25,655,093 | TC | TC | TC | TC | TC | TC |
chr05_25655681 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | C | T | chr05 | 25,655,681 | CT | CT | CT | CT | CT | CT |
chr05_25656010 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | C | T | chr05 | 25,656,010 | CT | CT | CT | CT | CT | CT |
chr05_25656354 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | C | T | chr05 | 25,656,354 | CT | CT | CT | CT | CT | CT |
chr05_25656957 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | intron_variant | folate | T | C | chr05 | 25,656,957 | TC | TC | TC | TC | TC | TC |
chr05_25657433 | Os05g0517500 | Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Similar to Gamma-glutamyl hydrolase. | synonymous_variant | folate | G | C | chr05 | 25,657,433 | GC | GC | GC | GC | GC | GC |
chr05_26199175 | Os05g0527000 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | G | T | chr05 | 26,199,175 | GT | GG | GG | GG | GG | GG |
chr05_7153717 | Os05g0215300 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | synonymous_variant | flavonoid | C | T | chr05 | 7,153,717 | CC | CC | CT | CC | CC | CC |
chr05_8785994 | Os05g0244700 | Aminotransferase, class IV family protein. | intron_variant | folate | G | T | chr05 | 8,785,994 | GT | GT | GG | GG | GG | GT |
chr05_8786022 | Os05g0244700 | Aminotransferase, class IV family protein. | intron_variant | folate | C | T | chr05 | 8,786,022 | CC | CC | CC | CT | CC | CC |
chr05_8786295 | Os05g0244700 | Aminotransferase, class IV family protein. | missense_variant | folate | G | C | chr05 | 8,786,295 | GC | GC | GC | GC | GG | GC |
chr05_8786635 | Os05g0244700 | Aminotransferase, class IV family protein. | synonymous_variant | folate | T | G | chr05 | 8,786,635 | TT | TT | TG | TT | TT | TT |
chr05_8786968 | Os05g0244700 | Aminotransferase, class IV family protein. | intron_variant | folate | C | T | chr05 | 8,786,968 | CC | CC | CC | CT | CC | CC |
chr05_8787101 | Os05g0244700 | Aminotransferase, class IV family protein. | synonymous_variant | folate | G | T | chr05 | 8,787,101 | GG | GG | GG | GG | GG | GT |
chr05_8787142 | Os05g0244700 | Aminotransferase, class IV family protein. | missense_variant | folate | G | A | chr05 | 8,787,142 | GG | GA | GG | GG | GG | GG |
chr05_8787309 | Os05g0244700 | Aminotransferase, class IV family protein. | missense_variant | folate | T | A | chr05 | 8,787,309 | TA | TT | TA | TT | TT | TT |
chr05_8787487 | Os05g0244700 | Aminotransferase, class IV family protein. | 5_prime_UTR_variant | folate | T | C | chr05 | 8,787,487 | TC | TC | TC | TC | TT | TC |
chr06_10479460 | Os06g0288300 | C-glucosyltransferase, Flavone-C-glycoside synthesis | synonymous_variant | flavonoid | C | G | chr06 | 10,479,460 | CG | CC | CC | CC | CC | CC |
chr06_10479849 | Os06g0288300 | C-glucosyltransferase, Flavone-C-glycoside synthesis | missense_variant | flavonoid | A | G | chr06 | 10,479,849 | AG | AA | AA | AA | AA | AA |
chr06_10480582 | Os06g0288300 | C-glucosyltransferase, Flavone-C-glycoside synthesis | synonymous_variant | flavonoid | A | G | chr06 | 10,480,582 | AG | AA | AA | AA | AA | AA |
chr06_2816508 | Os06g0154600 | Similar to Dihydroneopterin aldolase. | missense_variant | folate | C | A | chr06 | 2,816,508 | CA | CA | CA | CA | CA | CC |
chr06_2817049 | Os06g0154600 | Similar to Dihydroneopterin aldolase. | synonymous_variant | folate | C | T | chr06 | 2,817,049 | CT | CT | CT | CT | CT | CC |
chr06_29417486 | Os06g0699700 | Similar to Aminodeoxychorismate synthase/glutamine amidotransferase. | missense_variant | folate | C | T | chr06 | 29,417,486 | CC | CC | CC | CT | CC | CC |
chr06_29417607 | Os06g0699700 | Similar to Aminodeoxychorismate synthase/glutamine amidotransferase. | synonymous_variant | folate | C | T | chr06 | 29,417,607 | CT | CT | CT | CC | CT | CT |
chr06_29417986 | Os06g0699700 | Similar to Aminodeoxychorismate synthase/glutamine amidotransferase. | synonymous_variant | folate | T | C | chr06 | 29,417,986 | TT | TT | TT | TT | TC | TT |
chr06_29418256 | Os06g0699700 | Similar to Aminodeoxychorismate synthase/glutamine amidotransferase. | synonymous_variant | folate | G | A | chr06 | 29,418,256 | GA | GA | GA | GA | GA | GA |
chr07_10018833 | Os07g0271500 | Similar to Chalcone synthase. | missense_variant | flavonoid | G | A | chr07 | 10,018,833 | GG | GG | GG | GA | GG | GG |
chr07_10019311 | Os07g0271500 | Similar to Chalcone synthase. | intron_variant | flavonoid | T | C | chr07 | 10,019,311 | TT | TT | TT | TC | TT | TT |
chr07_10637856 | Os07g0280200 | AMP-dependent synthetase and ligase domain containing protein. | intron_variant | flavonoid | T | G | chr07 | 10,637,856 | TT | TT | TT | TG | TT | TT |
chr07_10637856 | Os07g0280600 | Hypothetical protein. | intron_variant | flavonoid | T | G | chr07 | 10,637,856 | TT | TT | TT | TG | TT | TT |
chr07_18874068 | Os07g0501100 | Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). | 3_prime_UTR_variant | flavonoid | G | A | chr07 | 18,874,068 | GG | GG | GA | GG | GG | GG |
chr07_18874382 | Os07g0501133 | Hypothetical gene. | missense_variant | flavonoid | T | G | chr07 | 18,874,382 | TT | TT | TG | TT | TT | TT |
chr07_18874382 | Os07g0501100 | Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). | synonymous_variant | flavonoid | T | G | chr07 | 18,874,382 | TT | TT | TG | TT | TT | TT |
chr07_18874697 | Os07g0501133 | Hypothetical gene. | missense_variant | flavonoid | C | G | chr07 | 18,874,697 | CG | CC | CC | CC | CC | CC |
chr07_18874697 | Os07g0501100 | Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). | synonymous_variant | flavonoid | C | G | chr07 | 18,874,697 | CG | CC | CC | CC | CC | CC |
chr07_18875570 | Os07g0501100 | Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2). | synonymous_variant | flavonoid | C | G | chr07 | 18,875,570 | CC | CC | CG | CC | CC | CC |
chr07_20420936 | Os07g0525500 | Similar to chalcone synthase 8. | synonymous_variant | flavonoid | G | C | chr07 | 20,420,936 | GG | GG | GC | GG | GG | GG |
chr07_20420936 | Os07g0525450 | Hypothetical gene. | missense_variant | flavonoid | G | C | chr07 | 20,420,936 | GG | GG | GC | GG | GG | GG |
chr07_20421061 | Os07g0525450 | Hypothetical gene. | synonymous_variant | flavonoid | C | T | chr07 | 20,421,061 | CC | CC | CC | CT | CC | CC |
chr07_20421061 | Os07g0525500 | Similar to chalcone synthase 8. | missense_variant | flavonoid | C | T | chr07 | 20,421,061 | CC | CC | CC | CT | CC | CC |
chr07_25524746 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | A | G | chr07 | 25,524,746 | AG | AG | AG | AG | AG | AG |
chr07_25525144 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | synonymous_variant | folate | G | C | chr07 | 25,525,144 | GC | GC | GC | GC | GC | GC |
chr07_25526281 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | synonymous_variant | folate | G | T | chr07 | 25,526,281 | GG | GG | GT | GG | GG | GG |
chr07_25526474 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | missense_variant | folate | A | G | chr07 | 25,526,474 | AG | AG | AG | AA | AG | AG |
chr07_25526902 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | 3_prime_UTR_variant | folate | C | T | chr07 | 25,526,902 | CT | CT | CT | CT | CT | CT |
chr07_25527444 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | 3_prime_UTR_variant | folate | T | C | chr07 | 25,527,444 | TC | TC | TC | TT | TC | TC |
chr07_25527596 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | T | A | chr07 | 25,527,596 | TA | TA | TA | TA | TA | TA |
chr07_25528376 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | A | G | chr07 | 25,528,376 | AG | AG | AG | AG | AG | AG |
chr07_25528623 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | G | A | chr07 | 25,528,623 | GA | GA | GA | GA | GA | GA |
chr07_25529004 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | G | T | chr07 | 25,529,004 | GT | GT | GT | GG | GT | GT |
chr07_25529116 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | A | T | chr07 | 25,529,116 | AA | AA | AA | AT | AA | AA |
chr07_25529632 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | C | G | chr07 | 25,529,632 | CC | CC | CC | CG | CC | CC |
chr07_25529664 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | intron_variant | folate | G | A | chr07 | 25,529,664 | GA | GA | GA | GG | GA | GA |
chr07_25530235 | Os07g0618500 | Similar to HPPK/DHPS.;Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15). | 3_prime_UTR_variant | folate | T | C | chr07 | 25,530,235 | TC | TC | TC | TT | TC | TC |
chr08_2382531 | Os08g0143300 | AMP-dependent synthetase and ligase domain containing protein. | missense_variant | flavonoid | C | G | chr08 | 2,382,531 | CC | CC | CC | CC | CG | CC |
chr08_25592457 | Os08g0515900 | Similar to Dihydroflavonol-4-reductase. | missense_variant | flavonoid | G | T | chr08 | 25,592,457 | GG | GG | GG | GG | GT | GG |
chr08_27833422 | Os08g0556200 | Similar to Dihydroneopterin aldolase. | intron_variant | folate | C | T | chr08 | 27,833,422 | CT | CT | CT | CT | CT | CT |
chr08_27833716 | Os08g0556200 | Similar to Dihydroneopterin aldolase. | intron_variant | folate | A | G | chr08 | 27,833,716 | AG | AG | AG | AG | AG | AG |
chr08_27834093 | Os08g0556200 | Similar to Dihydroneopterin aldolase. | 3_prime_UTR_variant | folate | A | G | chr08 | 27,834,093 | AG | AG | AG | AG | AG | AG |
chr08_4898080 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | T | C | chr08 | 4,898,080 | TC | TT | TT | TT | TT | TT |
chr08_4898415 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | G | A | chr08 | 4,898,415 | GA | GG | GG | GG | GG | GG |
chr08_4898790 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | A | G | chr08 | 4,898,790 | AA | AA | AA | AA | AA | AG |
chr08_4898859 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | 3_prime_UTR_variant | flavonoid | A | T | chr08 | 4,898,859 | AA | AA | AT | AA | AA | AA |
chr08_4898933 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | synonymous_variant | flavonoid | G | C/A | chr08 | 4,898,933 | GC | GC | GG | GC | GA | GG |
chr08_4898933 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | missense_variant | flavonoid | G | C/A | chr08 | 4,898,933 | GC | GC | GG | GC | GA | GG |
chr08_4900194 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | missense_variant | flavonoid | G | C | chr08 | 4,900,194 | GG | GG | GC | GG | GG | GG |
chr08_4900215 | Os08g0183900 | Similar to dihydroflavonol-4-reductase. | missense_variant | flavonoid | G | A | chr08 | 4,900,215 | GA | GG | GG | GG | GG | GG |
chr08_8874784 | Os08g0245301 | Hypothetical gene. | missense_variant | flavonoid | T | G | chr08 | 8,874,784 | TT | TT | TT | TT | TT | TG |
chr08_8874784 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | missense_variant | flavonoid | T | G | chr08 | 8,874,784 | TT | TT | TT | TT | TT | TG |
chr08_8877016 | Os08g0245301 | Hypothetical gene. | intron_variant | flavonoid | G | A | chr08 | 8,877,016 | GG | GG | GG | GG | GG | GA |
chr08_8877016 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | G | A | chr08 | 8,877,016 | GG | GG | GG | GG | GG | GA |
chr08_8877334 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | T | G | chr08 | 8,877,334 | TT | TT | TT | TT | TT | TG |
chr08_8877334 | Os08g0245301 | Hypothetical gene. | intron_variant | flavonoid | T | G | chr08 | 8,877,334 | TT | TT | TT | TT | TT | TG |
chr08_8877543 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | C | T | chr08 | 8,877,543 | CC | CC | CT | CC | CC | CC |
chr08_8877543 | Os08g0245301 | Hypothetical gene. | intron_variant | flavonoid | C | T | chr08 | 8,877,543 | CC | CC | CT | CC | CC | CC |
chr08_8877857 | Os08g0245301 | Hypothetical gene. | 5_prime_UTR_variant | flavonoid | C | T | chr08 | 8,877,857 | CC | CC | CC | CC | CC | CT |
chr08_8877857 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | missense_variant | flavonoid | C | T | chr08 | 8,877,857 | CC | CC | CC | CC | CC | CT |
chr08_8878091 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | A | T | chr08 | 8,878,091 | AA | AA | AA | AT | AA | AA |
chr08_8878117 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | A | G | chr08 | 8,878,117 | AA | AA | AA | AA | AA | AG |
chr08_8878252 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | missense_variant | flavonoid | G | A | chr08 | 8,878,252 | GG | GG | GA | GG | GG | GG |
chr08_8878321 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | intron_variant | flavonoid | G | T | chr08 | 8,878,321 | GT | GG | GG | GG | GG | GG |
chr08_8878593 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | 3_prime_UTR_variant | flavonoid | C | G | chr08 | 8,878,593 | CC | CC | CC | CC | CC | CG |
chr08_8878672 | Os08g0245200 | 4-coumarate:coenzyme A ligase, Lignin biosynthesis | 3_prime_UTR_variant | flavonoid | A | C | chr08 | 8,878,672 | AA | AC | AA | AA | AA | AA |
chr09_11289403 | Os09g0353400 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | C | G | chr09 | 11,289,403 | CC | CC | CC | CG | CC | CC |
chr09_11289532 | Os09g0353400 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | G | A | chr09 | 11,289,532 | GA | GG | GG | GG | GG | GG |
chr09_11291058 | Os09g0353400 | Similar to Leucoanthocyanidin dioxygenase. | 3_prime_UTR_variant | flavonoid | A | C | chr09 | 11,291,058 | AA | AA | AC | AA | AA | AA |
chr09_11309538 | Os09g0353700 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | C | T | chr09 | 11,309,538 | CT | CC | CC | CC | CC | CC |
chr09_11320623 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | C | T | chr09 | 11,320,623 | CT | CC | CC | CC | CC | CC |
chr09_11321557 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | G | A | chr09 | 11,321,557 | GA | GG | GG | GG | GG | GG |
chr09_11321796 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | T | G | chr09 | 11,321,796 | TT | TT | TT | TT | TT | TG |
chr09_11321887 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | G | A | chr09 | 11,321,887 | GG | GG | GA | GG | GG | GG |
chr09_11322053 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | intron_variant | flavonoid | G | A | chr09 | 11,322,053 | GA | GG | GG | GG | GG | GG |
chr09_11322892 | Os09g0354100 | Similar to Leucoanthocyanidin dioxygenase. | missense_variant | flavonoid | C | A | chr09 | 11,322,892 | CC | CC | CA | CC | CC | CC |
chr09_19012056 | Os09g0491820 | Similar to dihydroflavonol-4-reductase.;NAD(P)-binding domain containing protein. | 3_prime_UTR_variant | flavonoid | A | G | chr09 | 19,012,056 | AA | AA | AG | AA | AA | AA |
chr09_19012056 | Os09g0491820 | Similar to dihydroflavonol-4-reductase.;NAD(P)-binding domain containing protein. | missense_variant | flavonoid | A | G | chr09 | 19,012,056 | AA | AA | AG | AA | AA | AA |
chr09_21923522 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | C | T | chr09 | 21,923,522 | CT | CC | CT | CC | CT | CT |
chr09_21924356 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | C | T | chr09 | 21,924,356 | CT | CC | CT | CC | CT | CT |
chr09_21924441 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | T | C | chr09 | 21,924,441 | TT | TC | TT | TC | TT | TT |
chr09_21924576 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | T | C | chr09 | 21,924,576 | TC | TT | TC | TT | TC | TC |
chr09_21925229 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | A | G | chr09 | 21,925,229 | AA | AA | AG | AA | AA | AA |
chr09_21925482 | Os09g0553300 | NUDIX hydrolase domain containing protein. | intron_variant | folate | A | G | chr09 | 21,925,482 | AG | AA | AG | AA | AG | AG |
chr09_21925883 | Os09g0553300 | NUDIX hydrolase domain containing protein. | synonymous_variant | folate | C | A | chr09 | 21,925,883 | CC | CC | CA | CC | CC | CC |
chr09_22273266 | Os09g0560500 | Dihydroneopterin aldolase family protein. | intron_variant | folate | G | A | chr09 | 22,273,266 | GA | GG | GG | GG | GG | GG |
chr09_22273270 | Os09g0560500 | Dihydroneopterin aldolase family protein. | intron_variant | folate | G | C | chr09 | 22,273,270 | GG | GG | GG | GG | GG | GC |
chr09_22274040 | Os09g0560500 | Dihydroneopterin aldolase family protein. | missense_variant | folate | A | G | chr09 | 22,274,040 | AG | AA | AG | AA | AG | AG |
chr09_22274263 | Os09g0560500 | Dihydroneopterin aldolase family protein. | intron_variant | folate | A | G | chr09 | 22,274,263 | AG | AA | AA | AA | AA | AG |
chr09_22274617 | Os09g0560500 | Dihydroneopterin aldolase family protein. | missense_variant | folate | G | A | chr09 | 22,274,617 | GG | GG | GA | GG | GA | GG |
chr09_22274644 | Os09g0560500 | Dihydroneopterin aldolase family protein. | missense_variant | folate | G | A | chr09 | 22,274,644 | GA | GG | GG | GG | GG | GA |
chr10_19201609 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | 3_prime_UTR_variant | folate | T | C | chr10 | 19,201,609 | TC | TC | TC | TC | TC | TC |
chr10_19202433 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | 3_prime_UTR_variant | folate | C | T | chr10 | 19,202,433 | CT | CT | CT | CT | CT | CT |
chr10_19202433 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | synonymous_variant | folate | C | T | chr10 | 19,202,433 | CT | CT | CT | CT | CT | CT |
chr10_19202612 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | C | chr10 | 19,202,612 | TT | TT | TC | TT | TT | TT |
chr10_19202618 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | G | chr10 | 19,202,618 | TG | TG | TT | TG | TG | TG |
chr10_19203519 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | 3_prime_UTR_variant | folate | A | G | chr10 | 19,203,519 | AG | AG | AG | AG | AG | AG |
chr10_19203519 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | synonymous_variant | folate | A | G | chr10 | 19,203,519 | AG | AG | AG | AG | AG | AG |
chr10_19204327 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | C | A | chr10 | 19,204,327 | CA | CA | CA | CA | CA | CA |
chr10_19205367 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | C | A | chr10 | 19,205,367 | CA | CA | CA | CA | CA | CA |
chr10_19205680 | Os10g0503200 | Similar to Folylpolyglutamate synthase.;Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase. | intron_variant | folate | T | G | chr10 | 19,205,680 | TT | TT | TG | TT | TT | TT |
chr10_22020782 | Os10g0559450 | Conserved hypothetical protein. | intron_variant | flavonoid | T | C | chr10 | 22,020,782 | TT | TT | TC | TT | TT | TT |
chr10_22020782 | Os10g0559550 | Conserved hypothetical protein. | synonymous_variant | flavonoid | T | C | chr10 | 22,020,782 | TT | TT | TC | TT | TT | TT |
chr10_22020782 | Os10g0559500 | 2OG-Fe(II) oxygenase domain containing protein. | 3_prime_UTR_variant | flavonoid | T | C | chr10 | 22,020,782 | TT | TT | TC | TT | TT | TT |
chr10_8496533 | Os10g0317900 | Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript. | intron_variant | flavonoid | C | A | chr10 | 8,496,533 | CC | CC | CC | CA | CC | CC |
chr10_8498301 | Os10g0317900 | Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript. | intron_variant | flavonoid | A | G | chr10 | 8,498,301 | AA | AA | AA | AG | AA | AA |
chr10_8501236 | Os10g0317900 | Chrysoeriol 5'-Hydroxylase, Flavonoid B-ring hydroxylase, Tricin biosynthesis;Similar to Flavonoid 3-monooxygenase.;Non-protein coding transcript. | intron_variant | flavonoid | C | T | chr10 | 8,501,236 | CC | CC | CC | CT | CC | CC |
chr11_14672977 | Os11g0444000 | Similar to UDP-glucosyltransferase BX8. | 3_prime_UTR_variant | flavonoid | A | T | chr11 | 14,672,977 | AA | AT | AA | AA | AA | AA |
chr11_17054274 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | 5_prime_UTR_variant | folate | C | T | chr11 | 17,054,274 | CT | CC | CC | CC | CT | CT |
chr11_17054614 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr11 | 17,054,614 | AA | AA | AA | AG | AA | AA |
chr11_17055071 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr11 | 17,055,071 | AT | AA | AA | AA | AT | AT |
chr11_17055551 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr11 | 17,055,551 | GG | GA | GA | GG | GG | GG |
chr11_17055581 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr11 | 17,055,581 | AA | AA | AA | AG | AA | AA |
chr11_17055643 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | C | chr11 | 17,055,643 | TC | TT | TT | TT | TC | TC |
chr11_17055837 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | missense_variant | folate | G | A | chr11 | 17,055,837 | GA | GG | GG | GG | GA | GA |
chr11_17056268 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr11 | 17,056,268 | GG | GA | GA | GA | GG | GG |
chr11_17056621 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | missense_variant | folate | G | A | chr11 | 17,056,621 | GG | GA | GA | GG | GG | GG |
chr11_17056789 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr11 | 17,056,789 | CT | CT | CT | CT | CT | CT |
chr11_17057327 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | G | chr11 | 17,057,327 | TG | TG | TG | TG | TG | TG |
chr11_17057606 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | T | chr11 | 17,057,606 | GG | GG | GG | GT | GG | GG |
chr11_17057815 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr11 | 17,057,815 | GG | GA | GA | GG | GG | GG |
chr11_17058610 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | G | chr11 | 17,058,610 | CC | CG | CG | CC | CC | CC |
chr11_17059755 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr11 | 17,059,755 | AG | AG | AG | AG | AG | AG |
chr11_17060045 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | A | chr11 | 17,060,045 | CA | CC | CA | CC | CA | CA |
chr11_17060095 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr11 | 17,060,095 | AA | AT | AA | AT | AA | AA |
chr11_17060688 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr11 | 17,060,688 | AA | AG | AG | AG | AA | AA |
chr11_17060810 | Os11g0484400 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | G | chr11 | 17,060,810 | TG | TT | TT | TT | TG | TG |
chr11_19277598 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | 3_prime_UTR_variant | flavonoid | G | A | chr11 | 19,277,598 | GG | GA | GG | GG | GG | GG |
chr11_19277885 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | 3_prime_UTR_variant | flavonoid | A | G | chr11 | 19,277,885 | AA | AA | AA | AG | AA | AA |
chr11_19279512 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | intron_variant | flavonoid | C | T | chr11 | 19,279,512 | CC | CC | CC | CT | CC | CC |
chr11_19280030 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | intron_variant | flavonoid | T | C | chr11 | 19,280,030 | TT | TT | TT | TT | TT | TC |
chr11_19280040 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | intron_variant | flavonoid | T | G | chr11 | 19,280,040 | TT | TT | TT | TG | TT | TT |
chr11_19280523 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | intron_variant | flavonoid | T | C | chr11 | 19,280,523 | TT | TC | TT | TT | TT | TT |
chr11_19280781 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | synonymous_variant | flavonoid | C | T | chr11 | 19,280,781 | CC | CC | CC | CC | CC | CT |
chr11_19280813 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | missense_variant | flavonoid | C | T | chr11 | 19,280,813 | CT | CC | CC | CC | CC | CC |
chr11_19280957 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | 5_prime_UTR_variant | flavonoid | G | A | chr11 | 19,280,957 | GG | GA | GG | GG | GG | GG |
chr11_19281003 | Os11g0530600 | Similar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). | 5_prime_UTR_variant | flavonoid | C | T | chr11 | 19,281,003 | CC | CC | CC | CC | CC | CT |
chr11_22927285 | Os11g0599200 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | missense_variant | flavonoid | C | T | chr11 | 22,927,285 | CC | CC | CC | CC | CC | CT |
chr11_22927976 | Os11g0599200 | UDP-glucuronosyl/UDP-glucosyltransferase family protein. | 5_prime_UTR_variant | flavonoid | G | A | chr11 | 22,927,976 | GG | GG | GG | GG | GG | GA |
chr11_23922548 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | 5_prime_UTR_variant | folate | G | A | chr11 | 23,922,548 | GG | GG | GG | GG | GG | GA |
chr11_23922669 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | A | chr11 | 23,922,669 | CA | CC | CC | CA | CC | CC |
chr11_23922742 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | synonymous_variant | folate | C | T | chr11 | 23,922,742 | CC | CC | CC | CC | CC | CT |
chr11_23922806 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | missense_variant | folate | T | A | chr11 | 23,922,806 | TT | TA | TT | TT | TT | TT |
chr11_23922887 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr11 | 23,922,887 | AA | AA | AT | AA | AT | AA |
chr11_23922892 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr11 | 23,922,892 | AT | AA | AA | AT | AA | AA |
chr11_23923117 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | A | chr11 | 23,923,117 | TA | TT | TT | TT | TT | TT |
chr11_23923209 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr11 | 23,923,209 | CC | CC | CC | CT | CC | CC |
chr11_23923412 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr11 | 23,923,412 | GG | GG | GA | GG | GA | GG |
chr11_23923418 | Os11g0615250 | Similar to Bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr11 | 23,923,418 | AA | AG | AA | AA | AA | AG |
chr11_732174 | Os11g0116300 | Chalcone isomerase domain containing protein. | intron_variant | flavonoid | G | A | chr11 | 732,174 | GG | GG | GG | GG | GG | GA |
chr12_15130974 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | A | chr12 | 15,130,974 | CA | CA | CA | CC | CA | CA |
chr12_15131238 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr12 | 15,131,238 | AA | AA | AA | AT | AA | AA |
chr12_15131517 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,131,517 | CT | CT | CT | CC | CT | CT |
chr12_15131669 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | T | chr12 | 15,131,669 | GT | GT | GT | GG | GT | GT |
chr12_15131694 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr12 | 15,131,694 | GG | GG | GG | GA | GG | GG |
chr12_15131924 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr12 | 15,131,924 | GG | GG | GG | GA | GG | GA |
chr12_15132005 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr12 | 15,132,005 | AG | AA | AA | AA | AA | AA |
chr12_15132460 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,132,460 | CT | CT | CT | CC | CT | CT |
chr12_15132878 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | C | chr12 | 15,132,878 | TC | TC | TC | TT | TC | TC |
chr12_15132907 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,132,907 | CC | CC | CC | CT | CC | CC |
chr12_15133107 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,133,107 | CC | CC | CC | CT | CC | CT |
chr12_15133111 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | C | chr12 | 15,133,111 | TC | TC | TC | TT | TC | TT |
chr12_15133431 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,133,431 | CT | CT | CT | CC | CT | CT |
chr12_15133454 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | C | chr12 | 15,133,454 | TT | TT | TT | TC | TT | TT |
chr12_15133797 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | T | chr12 | 15,133,797 | CT | CT | CT | CC | CT | CT |
chr12_15133807 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | G | chr12 | 15,133,807 | AA | AA | AA | AG | AA | AA |
chr12_15134595 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | synonymous_variant | folate | T | C | chr12 | 15,134,595 | TT | TT | TC | TC | TT | TT |
chr12_15135249 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | G | chr12 | 15,135,249 | CC | CC | CC | CG | CC | CC |
chr12_15135972 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | C | chr12 | 15,135,972 | AC | AC | AC | AA | AC | AC |
chr12_15136166 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | A | T | chr12 | 15,136,166 | AT | AT | AT | AT | AT | AT |
chr12_15137007 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | T | C | chr12 | 15,137,007 | TC | TC | TC | TC | TC | TC |
chr12_15137232 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | A | chr12 | 15,137,232 | GA | GA | GA | GG | GA | GA |
chr12_15137384 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | A | chr12 | 15,137,384 | CA | CA | CA | CC | CA | CA |
chr12_15138358 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | G | T | chr12 | 15,138,358 | GG | GG | GT | GT | GG | GG |
chr12_15138951 | Os12g0446900 | Similar to bifunctional dihydrofolate reductase-thymidylate synthase. | intron_variant | folate | C | G | chr12 | 15,138,951 | CG | CG | CG | CC | CG | CG |
chr12_26636096 | Os12g0623800 | Similar to GLA1. | synonymous_variant | folate | A | G | chr12 | 26,636,096 | AG | AG | AG | AG | AG | AG |
chr12_26636488 | Os12g0623800 | Similar to GLA1. | intron_variant | folate | T | C | chr12 | 26,636,488 | TC | TC | TC | TC | TC | TC |
RAPDB ID | Gene descriptions | SNP effects | Pathways |